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Hello,
I'm using the batchGOView.pl script to generate images of GO terms for different gene sets. I can't seem to change the p-value threshold from the default of 0.01 even after changing the 'pvalueCutOff' parameter in the configuration file, GoView.conf. When I change the threshold, it does change the tabular output of the enriched GO terms to show those that meet the threshold, but the image does not change.
How do you change the p-value threshold used to draw the image?
The web interface at SGD to GO TermFinder does allow different p-value thresholds that do result in different images. However, when I run the same list of yeast genes in my local instance of GO-TermFinder, the image does not change.
Thank you,
- Ben
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